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Table 4 Strong outperformance of each method. For each of the seven processing methods, and for each of the four analyses, the number out of the other 6 processing methods that strongly outperform the given method at FDR = 0.05 was determined.

From: Comparison of seven methods for producing Affymetrix expression scores based on False Discovery Rates in disease profiling data

 

Colon

Ovary

 

t

RS

t

RS

TM

1

1

0

0

GCRMA-EB

5

5

5

4

MAS5

4

5

6

6

GCRMA-MLE

4

0

1

0

PDNN

2

4

1

0

RMA

3

3

1

4

DChip

0

2

0

0