Figure 5
From: Species-specific analysis of protein sequence motifs using mutual information
Workflow of the web service PROMI. In step one the user specifies the motif and selects (may be user submitted) protein files. For sane results step two can be used to refine the selection derived by step one (by disabling false positive matches) and to limit the matches for a balanced ratio within the classes. Step three is the presentation of the complete and pairwise calculations in plots (compare Figure 2) as well as tables breaking down the multiple alignments into ratios of amino acids per position.