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Table 3 Overlap of pair-wise predictions of functional (or localization) similarity by different methods.

From: AVID: An integrative framework for discovering functional relationships among proteins

METHODS

AVID

MARCOTTE

STRING

PIP_600a

LIANG

MAGICb

MAGICc

SCHLITT

AVID

37451

3020

3413

785

2570

2740

49

9

MARCOTTE

 

33919

9873

3528

2454

1971

66

26

STRING

  

23245

3614

1740

1819

32

21

PIP_600 a

   

9897

425

260

8

1

LIANG

    

7963

1647

41

6

MAGIC b

     

7922

397

7

MAGIC c

      

397

1

SCHLITT

       

526

  1. a. This study was intended to predict pairs of proteins that co-localize to the same complex.
  2. b. MAGIC pairs with p ≥ 0.5
  3. c. MAGIC pairs with p ≥ 0.7
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BMC Bioinformatics

ISSN: 1471-2105

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