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Table 1 Analysis of the scores. Average scores for different categories of substitutions. The stop codons are excluded from this analysis.

From: Empirical codon substitution matrix

 

n Substitutions

Avg. Score

Identity

61

12.9

Synonymous: all

87

8.7

Synonymous: 1 base change

67

10.0

Synonymous: 2 base changes

14

6.6

Synonymous: 3 base changes

6

-1.7

Non-syn.: all

1743

-7.3

Non-syn.: 1 base change

196

-1.3

Non-syn.: 2 base changes

770

-5.9

Non-syn.: 3 base changes

777

-10.3

All Substitutions

1891

-5.9