Figure 5
From: Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
3D matching for xyna-theau xynz-clotm using SPDBV magic fit. 3D images of fit obtained by using SPDBV [30, 31] software's "magic fit" tools. The first value in the bracket is the SSS for the subsequence and second refers to rms value obtained by the tool in 0A Color red is used for xyna-theau and yellow for xynz-clotm. The two proteins are similar proteins with high BLAST score and overlapping 3D structures. SSS however is still able to catch subsequences that are left as dissimilar by BLAST, and low rms values for captured subsequences confirm the findings. The subsequences in the figures are (a) SCVGITVM & NCNTFVMW (b) GITVWGVA & TFVMWGFT (c) RVKQWRAA & MIKSMKER (d) EDGSLRQT & SGNGLRSS belonging to xyna-theau and xynz-clotm respectively.