Figure 4
From: Detailed protein sequence alignment based on Spectral Similarity Score (SSS)
3D matching for PAKd PAKe using SPDBV magic fit. 3D images of fit obtained by using SPDBV [30, 31] software's "magic fit" tools. The first value in the bracket is the SSS for the subsequence and second refers to rms value obtained by the tool in 0A. Color red is used for PKCd and yellow for PKCe. The subsequences in the figures are (a)MKEALSTE & DDSRIGQT (b) ANQPFCAV & QTFLLDPY (c) GKAEFWLD & ANCTIQFE (d) QAKVLMSV & RVYVIIDL (e) RVIQIVLM & RKIELAVF belonging to PKCd and PKCe respectively. All subsequences are completely dissimilar using character based approaches but are found to be similar using SSS. Appreciably low rms values confirms that the subsequences in fig 4a-4e are similar subsequences.