Feature Set | Classifier | Classification accuracy (%) | Average training time* (s) | Average testing time* (s) | P-value |
---|---|---|---|---|---|
SLF13 (2D DNA) | Neural Network (nhu = 16, stop-fract = 0.1) | 87.8 | 116.3 | 0.001 | 0.43 |
 | SVM (linear, DAG, C = 1) | 87.9 | 0.7 | 0.088 | 0.36 |
 | SVM (rbf, DAG, sigma = 8, C = 16) | 89.4 | 1.1 | 0.470 | 0.03 |
 | SVM (exprbf, maxwin, sigma = 4, C = 4) | 89.2 | 3.5 | 0.530 | 0.04 |
 | SVM (poly, maxwin, degree = 2, C = 0.01) | 88.6 | 4.7 | 0.140 | 0.21 |
 | Adaboost (nhu = 8, nboost = 64) | 88.9 | 55.2 | 0.018 | 0.10 |
 | Bagging (nhu = 64, nbag = 32) | 88.9 | 111.0 | 0.078 | 0.09 |
 | Mixtures-of-Experts (nhu = 16, nhug = 64, ne = 16) | 89.7 | 38.3 | 0.010 | 0.02 |
SLF8 (2D) | Neural Network (nhu = 16, stop-fract = 0.3) | 86.1 | 139.1 | 0.001 | 0.53 |
 | SVM (linear, DAG, C = 1) | 84.9 | 0.7 | 0.075 | 0.83 |
 | SVM (rbf, maxwin, sigma = 8, C = 64) | 87.9 | 11.4 | 1.600 | 0.15 |
 | SVM (exprbf, maxwin, sigma = 8, C = 16) | 88.1 | 4.0 | 0.540 | 0.02 |
 | SVM (poly, maxwin, degree = 2, C = 0.01) | 86.7 | 5.2 | 0.170 | 0.37 |
 | Adaboost (nhu = 32, nboost = 128) | 88.2 | 412.0 | 0.190 | 0.12 |
 | Bagging (nhu = 64, nbag = 64) | 87.2 | 238.2 | 0.160 | 0.17 |
 | Mixtures-of-Experts (nhu = 32, nhug = 16, ne = 4) | 87.0 | 11.6 | 0.002 | 0.22 |
SLF10 (3D DNA) | Neural Network (nhu = 32, stop-fract = 0.1) | 95.3 | 740.3 | 0.001 | 0.06 |
 | SVM (linear, DAG, C = 8) | 93.3 | 0.3 | 0.043 | 0.47 |
 | SVM (rbf, maxwin, sigma = 2, C = 64) | 95.0 | 2.3 | 0.230 | 0.08 |
 | SVM (exprbf, DAG, sigma = 1, C = 1) | 95.2 | 0.5 | 0.081 | 0.06 |
 | SVM (poly, maxwin, degree = 2, C = 1) | 93.1 | 2.0 | 0.067 | 0.51 |
 | Adaboost (nhu = 32, nboost = 32) | 93.2 | 43.2 | 0.016 | 0.46 |
 | Bagging (nhu = 64, nbag = 4) | 89.4 | 6.8 | 0.003 | 0.99 |
 | Mixtures-of-Experts (nhu = 32, nhug = 64, ne = 16) | 92.2 | 45.8 | 0.007 | 0.74 |
SLF14 (3D) | Neural Network (nhu = 32, stop-fract = 0) | 88.4 | 172.0 | 0.001 | 0.02 |
 | SVM (linear, DAG, C = 32) | 86.5 | 1.0 | 0.047 | 0.12 |
 | SVM (rbf, maxwin, sigma = 2, C = 32) | 86.6 | 4.6 | 0.290 | 0.17 |
 | SVM (exprbf, maxwin, sigma = 2, C = 8) | 89.1 | 1.4 | 0.170 | 0.05 |
 | SVM (poly, maxwin, degree = 2, C = 2) | 87.3 | 8.3 | 0.068 | 0.05 |
 | Adaboost (nhu = 64, nboost = 64) | 87.7 | 144.3 | 0.085 | 0.03 |
 | Bagging (nhu = 64, nbag = 256) | 82.2 | 505.7 | 0.340 | 0.82 |
 | Mixtures-of-Experts (nhu = 16, nhug = 8, ne = 2) | 83.8 | 2.9 | 0.001 | 0.59 |