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Table 1 Classification of genes according to ChIP data and inferred regulatory coupling.

From: Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data

TF

B-

B+/C+

B+/C-

Unclassified*

Abf1

5638

138

136

470

Ace2

5843

33

33

473

Arg81

5985

11

10

376

Bas1

5975

28

13

366

Cad1

5854

26

13

489

Dal81

5823

24

16

519

Dig1

5872

20

11

479

Fhl1

5754

146

37

445

Fkh2

5261

61

45

1015

Gal4

5149

20

20

1193

Gat3

5891

40

29

422

Gcn4

5919

58

21

384

Hal9

5948

4

13

417

Hap4

5939

47

21

375

Hir1

5963

19

10

390

Hir2

5932

8

13

429

Hsf1

5929

35

17

401

Leu3

5988

8

13

373

Mbp1

5641

65

40

636

Mcm1

5709

42

46

585

Met31

5983

15

13

371

Msn4

5952

23

7

400

Mss11

4735

11

9

1627

Ndd1

5799

50

42

491

Nrg1

5912

61

20

389

Rlm1

5900

13

24

445

Sig1

5683

0

0

699

Sko1

5155

2

0

1225

Sok2

4881

10

6

1485

Stb1

5791

13

10

568

Ste12

5725

19

31

607

Sum1

5919

35

26

402

Swi4

5528

75

48

731

Swi5

5358

47

45

932

Thi2

5940

5

1

436

Yap1

5959

28

16

379

Yap6

5924

33

54

371

  1. *Genes whose expression level in microarray data or binding P-value in Lee et al. is not available. The number of genes in each of the categories (B-, unbound genes; B+/C+, bound and coupling genes; B+/C-, genes that are bound but do not couple) is shown for each of the 37 transcription factors analyzed. On average, 58% of the significantly bound genes were classified in the B+/C+ group.