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Table 1 Description of databases used for similarity searches.

From: prot4EST: Translating Expressed Sequence Tags from neglected genomes

Source

Tier*

Database

Link

ribosomal RNA

1

RBP II

http://rdp.cme.msu.edu

mitochondrial proteins

2

NCBI

ftp://ftp.ncbi.nih.gov/blast/db/

protein sequences

3

SwissProt/TrEMBL

http://ca.expasy.org/sprot/

  1. *the stage in which the database is used in prot4EST pipeline (see Figure 2).