Table 3 Accuracy scores. The average accuracy, measured by the Q score, is reported for each method on each set of reference alignments.
From: MUSCLE: a multiple sequence alignment method with reduced time and space complexity
Method | PREFAB | BAliBASE | SABmark | SMART |
|---|---|---|---|---|
MUSCLE | 0.648 | 0.896 | 0.430 | 0.856 |
MUSCLE-prog | 0.634 | 0.883 | 0.427 | 0.837 |
FFTNS1 | 0.619 | 0.844 | 0.376 | 0.815 |
MUSCLE-fast | 0.616 | 0.849 | 0.396 | 0.813 |
CLUSTALW | 0.588 | 0.860 | 0.404 | 0.823 |
POA-blast | 0.577 | 0.839 | 0.352 | 0.788 |
POA | 0.576 | 0.834 | 0.280 | 0.797 |