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Figure 5 | BMC Bioinformatics

Figure 5

From: Statistical extraction of Drosophila cis-regulatory modules using exhaustive assessment of local word frequency

Figure 5

Extraction of CRM sequences using local word frequency algorithm. (A-D) The statistical LWF profiles (Λ) are compared with the conservation profiles (PIP) constructed for loci of several developmental genes of D. melanogaster. Map of functional CRM regions (deletion analysis data) is given on the bottom of each panel. Correlation (cc) between the statistical (blue line) and the conservation profiles (green line) was measured for the entire locus sequence (see Table 1). Notice that we put percent of sequence identity to zero in exons (yellow bars in the functional map), thus penalizing the correlation value if the word frequency algorithm produced positive score in these regions (see B).

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