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Figure 2 | BMC Bioinformatics

Figure 2

From: Genome-wide prediction, display and refinement of binding sites with information theory-based models

Figure 2

Screen shot of results generated by Delila-Genome visualization tools. This example shows predicted PXR/RXRα binding sites at the zeta crystalline locus. Genome-wide HTML and BED files have been generated by the promotsite program. Sites are in the HTML ordered by information content. Hyperlinked pages (arrows from Delila-Genome HTML page) reveal details about binding sites and annotations of the gene associated with the binding site. Panels indicate: (A) Delila-Genome HTML page for viewing sorted binding sites with associated genes; (B) UCSC browser custom track detail for specific binding site; (C) Sequence of binding site; (D) Sequence walker of the binding site (computed on the server and displayed on client running X-windows); (E) GenBank entry for mRNA accession number associated with binding site (F) Stanford SOURCE database entry providing current information about gene template of GenBank mRNA accession (G) UCSC browser for viewing sites in the gene associated with the GenBank accession.

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