Figure 9
From: An automated method for finding molecular complexes in large protein interaction networks
Effect of Complex Score Threshold on MCODE Prediction Accuracy Figure legend: MCODE complexes equal to or greater than a specific score were compared to a benchmark comprising the combined MIPS and Gavin benchmarks. Accuracy was calculated as the number of known complexes better or equal to the threshold score divided by the total number of predicted complexes (matching and non-matching) at that threshold. A complex was deemed to match a known complex if it had an overlap score above 0.2. The number of predicted complexes that matched known complexes at each score threshold is shown as labels on the plot.