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Table 4 Modules predicted by Ahab from the hairy derived Gibbs motifs that are patterned in the early blastoderm.

From: Computational detection of genomic cis- regulatory modules applied to body patterning in the early Drosophila embryo

Rank

Score

Gene

Location

1 *

42.16

hairy (stripe 7 element)

up/10.9 kb

2 *

36.43

hairy (stripe 6 element)

up/9.2 kb

3 *

31.43

hairy (stripe 5 element)

up/6.2 kb

4 *

25.08

hairy (stripe 7 element)

up/10.4 kb

5

22.58

hunchback (hb central stripe)

up/3.3 kb

7

21.91

abd-A (in iab-7 region)

up/83.2 kb

8

20.02

homothorax

intra

9

19.41

bxd (in bxd reg region)

up/18.8 kb

10

18.55

frizzled 2

up/37.9 kb

16

17.76

hairy (not in known modules)

up/18.9 kb

17

17.73

abd-A

up/0.2 kb

21

17.43

abd-A

up/35.8 kb

24

16.69

fd64A

up/1.4 kb

25

16.55

nubbin

up/2.6 kb

31

16.10

extra macrochaetae

down/2.2 kb

37

15.90

knirps

intra

46

15.90

Btk29A

intra

11

18.55

CG6559

up/30 kb

39

15.72

CG6559

up/45 kb

  1. The last two modules are distinguished by proximity to a common gene. Modules which were used to construct weight matrices are marked with stars. The format follows Table 1. For references and additional material see additional File 5.