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Table 1 The 32 modules and nearby genes which are known to be patterned in the early blastoderm (upper block) and 11 additional modules (lower block) for which a pair is linked to the same gene.

From: Computational detection of genomic cis- regulatory modules applied to body patterning in the early Drosophila embryo

Rank

Score

Gene

Location

1 *

37.82

hairy (stripe 6)

up/9.2 kb

2 *

28.29

knirps

up/1.6 kb

3 *

27.24

tailless

up/2.6 kb

5 *

25.32

knirps

up/1.1 kb

8

20.80

runt (stripe 7)

up/3.2 kb

9

19.89

optix = six3

down/11 kb

10

19.75

Dichaete

down/2.3 kb

17

18.88

Tenascin-m

up/110 kb

18

18. 87

giant

down/14.5 kb

20 *

18.76

Kruppel

up/4.1 kb

23

18.30

ken

intra

24

18.29

giant (posterior)

up/2.1 kb

25

18.29

hairy (stripe 1)

up/4.7 kb

27

18.06

hairy (stripe 1 or 5)

up/5.4 kb

34

17.36

hairy (stripe 7)

up/10.4 kb

36 *

17.25

even skipped (stripe 3+7)

up/3.5 kb

37

17.15

knirps-like

intra

41 *

17.02

hairy (stripe 5)

up/6.2 kb

43

16.94

brinker

up/10.9 kb

45

16.83

pipsqueak

intra

46

16.82

teashirt

intra

48 *

16.80

short gastrulation

intra

51

16.76

abd-A

up/17 kb

54

16.65

abd-B

up/15.3 kb

61

16.20

vnd

intra

75

15.90

cap n' collar

up/4.3 kb

76 *

15.89

even skipped (stripe 2)

up/1.7 kb

91

15.69

runt (stripe 3)

up/9.67

120 *

15.34

tailless (proximal torso)

up/0.64 kb

124

15.32

proboscopedia

intra

126

15.29

runt

up/17.2 kb

129 *

15.24

hunchback (central stripe)

up/3.34 kb

6

23.97

Cyp6V1

down/1.6 kb

11

19.66

CG13595?

down/4.5 kb

14

19.32

Cyp6V1

up/6 kb

55

16.62

echinoid

up/58 kb

58

16.34

CG2118/Acf1/faf

intra

69

16.01

faf/Acf1/CG2118

intra

93

15.65

echinoid

intra

105

15.51

bruno 3

up/95 kb

117

15.37

CG5060

up/31.1 kb

130

15.22

bruno 3

up/25.1 kb

132

15.18

CG5060

up/30.1 kb

  1. Modules which were used to construct weight matrices are marked with stars. The columns give the rank of each module, the score, the gene, information about the location of the module in respect to the gene (up/downstream or intragenic). For References and additional material see additional File 3.