From: Using epigenomics data to predict gene expression in lung cancer
 | Average M value (Methylation) | Average Log Fold Change (Methylation) | Number of hypermethylated probes | Number of hypomethylated probes | Single nucleotide composition | Dinucleotide composition | Trinucleotide composition | Length of segment | Histone reads | Histone read comparisons (difference of reads/average of reads) | Conservation scores (PHASTCONS) |  |
---|---|---|---|---|---|---|---|---|---|---|---|---|
TSS 1500 | TSS1500_avgMval | TSS1500_avglogFC | TSS1500_numHyper | TSS1500_numHypo | TSS1500_A | TSS1500_AA | TSS1500_AAA | -- | TSS1500_S27 | TSS1500_A27_minus_S27_divavg | TSS1500_vertebrate | Â |
TSS 200 | TSS200_avgMval | TSS200_avglogFC | TSS200_numHyper | TSS200_numHypo | TSS200_A | TSS200_AA | TSS200_AAA | -- | TSS200_S27 | TSS200_A27_minus_S27_divavg | TSS200_vertebrate | Â |
UTR5 | UTR5_avgMval | UTR5_avglogFC | UTR5_numHyper | UTR5_numHypo | UTR5_A | UTR5_AA | UTR5_AAA | UTR5_length | UTR5_S27 | UTR5_A27_minus_S27_divavg | UTR5_vertebrate | Â |
First exon | first_exon_avgMval | first_exon_avglogFC | first_exon_numHyper | first_exon_numHypo | first_exon_A | first_exon_AA | first_exon_AAA | first_exon_length | first_exon_S27 | first_exon_A27_minus_S27_divavg | first_exon_vertebrate | Â |
First Intron | first_intron_avgMval | first_intron_avglogFC | first_intron_numHyper | first_intron_numHypo | first_intron_A | first_intron_AA | first_intron_AAA | first_intron_length | first_intron_S27 | first_intron_A27_minus_S27_divavg | first_intron_vertebrate | Â |
Exon Body | exon_avgMval | exon_avglogFC | exon_numHyper | exon_numHypo | exon_A | exon_AA | exon_AAA | exon_length | exon_S27 | exon_A27_minus_S27_divavg | exon_vertebrate | Â |
Intron Body | intron_avgMval | intron_avglogFC | intron_numHyper | intron_numHypo | intron_A | intron_AA | intron_AAA | intron_length | intron_S27 | intron_A27_minus_S27_divavg | intron_vertebrate | Â |
Coding Region (CDS) | CDS_avgMval | CDS_avglogFC | CDS_numHyper | CDS_numHypo | CDS_A | CDS_AA | CDS_AAA | CDS_length | CDS_S27 | CDS_A27_minus_S27_divavg | CDS_vertebrate | Â |
Last Intron | last_intron_avgMval | last_intron_avglogFC | last_intron_numHyper | last_intron_numHypo | last_intron_A | last_intron_AA | last_intron_AAA | last_intron_length | last_intron_S27 | last_intron_A27_minus_S27_divavg | last_intron_vertebrate | Â |
Last Exon | last_exon_avgMval | last_exon_avglogFC | last_exon_numHyper | last_exon_numHypo | last_exon_A | last_exon_AA | last_exon_AAA | last_exon_length | last_exon_S27 | last_exon_A27_minus_S27_divavg | last_exon_vertebrate | Â |
UTR3 | UTR3_avgMval | UTR3_avglogFC | UTR3_numHyper | UTR3_numHypo | UTR3_A | UTR3_AA | UTR3_AAA | UTR3_length | UTR3_S27 | UTR3_A27_minus_S27_divavg | UTR3_vertebrate | Â |
Full Transcript | fullTranscript_avgMval | fullTranscript_avglogFC | fullTranscript_numHyper | fullTranscript_numHypo | fullTranscript_A | fullTranscript_AA | fullTranscript_AAA | fullTranscript_length | fullTranscript_S27 | fullTranscript_A27_minus_S27_divavg | fullTranscript_vertebrate | Â |
Single Exon | single_exon_avgMval | single_exon_avglogFC | single_exon_numHyper | single_exon_numHypo | single_exon_A | single_exon_AA | single_exon_AAA | single_exon_length | single_exon_S27 | single_exon_A27_minus_S27_divavg | single_exon_vertebrate | Â |
Single Intron | single_intron_avgMval | single_intron_avglogFC | single_intron_numHyper | single_intron_numHypo | single_intron_A | single_intron_AA | single_intron_AAA | single_intron_length | single_intron_S27 | single_intron_A27_minus_S27_divavg | single_intron_vertebrate | Â |
Total Features | 14 | 14 | 14 | 14 | 56 | 224 | 896 | 12 | 84 | 42 | 42 | 1412 |
Exon-exon junction distances: | Maximum distance to 5' end | Maximum distance to 3' end | Minimum distance to 5' end | Minimum distance to 3' end | Average distance to 5' end | Average Distance to 3' end | Â | Â | Â | Â | Â | Â |
Hypermethylated | maxHyperTo5 | maxHyperTo3 | minHyperTo5 | minHyperTo3 | avgHyperTo5 | avgHyperTo3 | Â | Â | Â | Â | Â | Â |
Hypomethylated | maxHypoTo5 | maxHypoTo3 | minHypoTo5 | minHypoTo3 | avgHypoTo5 | avgHypoTo3 | Â | Â | Â | Â | Â | Â |
Total Features | 2 | 2 | 2 | 2 | 2 | 2 | 12 | Â | Â | Â | Â | Â |