Figure 2From: Piecing the puzzle together: a revisit to transcript reconstruction problem in RNA-seq(a) Alignments of the sequenced paired-end RNA-seq reads on the reference genome. (b) The read flow network that relates reads with in-fragment edges (dashed arrows) and between-fragment edges (solid arrows). (c) Solve a minimum flow (colored) on the read flow network. (d) The assembled effective transcript copies with maximized likelihood.Back to article page