Table 2 Ti me (s), recall (%), and precision (%) for aligning reads with different read lengths.
| Â | 50 bp | 75 bp | 100 bp | 200 bp | 500 bp | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Â | T(s) | R(%) | P(%) | T(s) | R(%) | P(%) | T(s) | R(%) | P(%) | T(s) | R(%) | P(%) | T(s) | R(%) | P(%) |
ARYANA | 159 | 83.01 | 92.66 | 302 | 88.29 | 95.83 | 271 | 90.14 | 97.05 | 647 | 92.47 | 98.75 | 2437 | 93.42 | 99.46 |
SeqAlto | 333 | 78.18 | 91.75 | 353 | 88.61 | 95.95 | 367 | 91.23 | 97.29 | 567 | 93.10 | 98.55 | 4843 | 93.74 | 99.20 |
Bowtie2 | 260 | 79.62 | 90.74 | 386 | 86.98 | 94.04 | 589 | 89.41 | 95.43 | 1342 | 92.25 | 97.71 | 8054 | 93.51 | 98.96 |
BWA | 369 | 70.15 | 90.76 | 609 | 85.04 | 94.43 | 890 | 89.67 | 96.08 | 2350 | 92.87 | 98.25 | 6603 | 93.70 | 99.15 |