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Table 4 Alignment statistics from MAP-RSeq using simulated dataset from BEERS

From: MAP-RSeq: Mayo Analysis Pipeline for RNA sequencing

MAP-RSeq features

Statistics

Total number of single reads

4000000

Reads used for alignment

3999995

Total number of reads mapped

3851539 (96.3%)

Reads mapped to transcriptome

3401468 (85.0%)

Reads mapped to junctions

450071 (11.3%)

Reads contributing to gene abundance

1395844

Reads contributing to exon abundance

11266392

Number of SNVs identified

6222