A semi-local neighborhood-based framework for probabilistic cell lineage tracing

BMC Bioinformatics

Table 1 1:1 links

	Correct 1:1 links	Safe subset of NN links		Safe, mutual, non-conflicting NN links
		Correct	Incorrect	Correct	Incorrect
Detection ground truth	140235	139126	53	137163	5
Segmented results	139151	138027	434	132878	219

Column 1 gives the number of 1:1 links in the detection ground truth and in the computed segmentation result. Detection FN make up the difference between the numbers. Column 2: Safe Subset of NN gives the number of potential NN links forward from ground truth or detected cells that pass the safe distance test (equation 1). Links that pass are subdivided into correct and incorrect categories. Column 3 gives the number of potential NN links that pass all 3 tests (equations 1, 2, 3) also broken down into correct and incorrect links.

ISSN: 1471-2105