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Table 2 Description of data sets used in application analysis

From: Non-specific filtering of beta-distributed data

Data set

Description

Platform

Source

# of probes after preprocessing

# of samples

1

Colon cancer

HM27

Local

19,965

20 NONCIMP vs. 6 CIMP

2

Glioblastoma

HM27

TCGA, plate 1,2,3,10

20,549

74 NONCIMP vs. 12 CIMP

3

Glioblastoma

HM450

TCGA, plate 79,111,130

374,601

93 NONCIMP vs. 6 CIMP

4

Kidney

HM27

TCGA, plate 64

21,624

50 KIRC vs. 45 normal

5

Kidney

HM450

TCGA, all KIRC

374,708

283 KIRC vs.160 normal

6

Breast

HM27

TCGA, plate 93

21,787

37 Infiltrating Ductal Carcinoma vs. 20 normal

7

Breast

HM450

TCGA, plate 109

377,853

56 Infiltrating Ductal Carcinoma vs. 17 normal

8

Normal blood

HM450

GEO:GSE40279, plate 2

383,911

84 blood samples