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Table 3 Comparison of NextClip and Skewer in processing Nextera long mate-pair (LMP) reads (ERA264981)

From: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads

Reads for scaffolding

Time for trimming adapters from Nextera LMP library (s)

Assembly

  

Pieces

N50 length

Total length (Mbp)

None

N/A

14097

19150

105.80

Paired end (PE) only

N/A

11781

23496

104.84

PE and NextClip processed

1480.39

6080

309342

111.55

PE and Skewer processed

993.49 (single thread)

5806

312317

112.52

 

155.96 (8 threads)

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