From: Skewer: a fast and accurate adapter trimmer for next-generation sequencing paired-end reads
Reads for scaffolding | Time for trimming adapters from Nextera LMP library (s) | Assembly | ||
---|---|---|---|---|
 |  | Pieces | N50 length | Total length (Mbp) |
None | N/A | 14097 | 19150 | 105.80 |
Paired end (PE) only | N/A | 11781 | 23496 | 104.84 |
PE and NextClip processed | 1480.39 | 6080 | 309342 | 111.55 |
PE and Skewer processed | 993.49 (single thread) | 5806 | 312317 | 112.52 |
 | 155.96 (8 threads) |  |  |  |