Table 6 Performance of docking model rankings according to ground truth criterion (DS93 dataset) based on average normalized χ 2
From: Scoring docking conformations using predicted protein interfaces
Ground truth criterion | Ranking method applied to DS93 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
x-rmsd | Interfaces + PioDock | PrISE +PioDock | T-PioDock | IBIS +PioDock | IRAD | ZRANK | SPIDER | SVM | TSVM | MI | |
i-rmsd | 5.2 | 11.6 | 27.5 | 30.0 | 30.2 | 39.5 | 43.3 | 49.1 | 60.7 | 61.4 | 67.8 |
l-rmsd | 6.0 | 12.5 | 27.0 | 29.7 | 33.5 | 39.5 | 44.2 | 50.6 | 63.9 | 64.5 | 70.9 |