Figure 4
From: Scoring docking conformations using predicted protein interfaces
Examples of successful and failed interfaces predicted by T-PIP. A) 1AVX:1BA7-B, B) 1ZM4:1XK9-A and C) 2FJU:2ZKM-X. Query chains are displayed in grey using solid surface representation. Representatives of interacting partners of proteins homologous to QPs are displayed as cartoons. Red, yellow and dark blue patches on solid surfaces represent correctly (TP), missed (FN) and wrongly (FP) predicted surface residues, respectively. In A) cyan, green and pink patches correspond to the actual binding sites of the interacting partners of 1BA7-B‘s homologues.