Table 4 Detail breakdown of the seed sequence classification of 9 Pfam and 4 SMART domains with positive concordance rate of < 90%
Pfam/SMART domains | Domain length | Positive concordance/Total discordance | Total common hits | Orphaned hits HMMER2/3 | Positive concordance (%) | Total discordance (%) |
|---|---|---|---|---|---|---|
PF00433.19 Pkinase_C | 159 | 108/89 | 197 | 55/0 | 54.82 | 45.18 |
PF01426.13 BAH | 349 | 53/10 | 63 | 4/0 | 84.13 | 15.87 |
PF02098.11 His_binding | 296 | 19/4 | 23 | 0/0 | 82.61 | 17.39 |
PF02965.12 Met_synt_B12 | 309 | 14/2 | 16 | 0/0 | 87.50 | 12.50 |
PF05594.9 Fil_haemagg | 160 | 122/16 | 138 | 17/0 | 88.41 | 11.59 |
PF10590.4 PNPOx_C_seed | 112 | 268/73 | 341 | 0/0 | 78.59 | 21.41 |
PF11736.3 DUF3299 | 235 | 79/13 | 92 | 0/0 | 85.87 | 14.13 |
PF13894.1 zf-C2H2_4 | 105 | 2/5 | 7 | 577/0 | 28.57 | 71.43 |
PF15612.1 WHIM1 | 66 | 29/4 | 33 | 3/0 | 87.88 | 12.12 |
SM00185 ARM | 66 | 128/34 | 162 | 7/0 | 79.01 | 20.99 |
SM00304 HAMP | 122 | 79/50 | 129 | 91/0 | 61.24 | 38.76 |
SM00320 WD40 | 119 | 580/137 | 717 | 1055/0 | 80.89 | 19.11 |
SM00733 Mterf | 49 | 115/39 | 155 | 90/0 | 74.19 | 25.16 |