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Figure 4 | BMC Bioinformatics

Figure 4

From: On the necessity of dissecting sequence similarity scores into segment-specific contributions for inferring protein homology, function prediction and annotation

Figure 4

HMMER2 versus HMMER3 average domain score (averaged over all seed sequences) for SMART (version 6) and Pfam (release 27). Figure A shows the comparison of HMMER2 versus HMMER3 domain scores for 735 (out of 808) SMART domains while Figure B shows the comparison for 12121 (out of 14831) Pfam domains. As a trend, the HMMER3 scores are smaller than the HMMER2 scores but strongly correlated (the goodness of fit r2 is 0.9692 for y = 0.6785x in the case of SMART and 0.9867 for y = 0.6629x in the case of Pfam).

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BMC Bioinformatics

ISSN: 1471-2105

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