MuTect | Strelka | VarScan2 | Shimmer | BAYSIC | |
---|---|---|---|---|---|
# of somatic mutations | 9977 | 6887 | 79313 | 8222 | 7194 |
Positions on chip | 2 | 2 | 120 | 23 | 3 |
Agreement with chip (SM on chip/SM with genotype agreeing with chip) | 100% (2/2) | 100% (2/2) | 100% (104/104) | 100% (10/10) | 100% (3/3) |
# in COSMIC | 330 | 179 | 165 | 222 | 510 |
% in COSMIC | 3.3% | 2.6% | 0.2% | 2.7% | 7.1% |
% unique somatic mutations | 36% | 8% | 83% | 51% | - |
# of somatic mutations causing coding changes | 58 | 58 | 458 | 113 | 164 |