Table 2 Filtered experimental data from cell line H929
Gene Name | Gene ID | Transcript ID | RNA-Seq Transcript Expression (FPKM) | RNA-Seq Gene Expression (FPKM) | Representative Affymetrix Probe set Id | Chromosome | Affymetrix Expression |
|---|---|---|---|---|---|---|---|
CCND1 | ENSG00000110092 | ENST00000539241 | 19.5901 | 42.7301 | 208712_at | chr11q13.2 | 279.6 |
CCND1 | ENSG00000110092 | CUFF.2094.1 | 15.7855 | 42.7301 | 208712_at | chr11q13.2 | 279.6 |
CCND1 | ENSG00000110092 | ENST00000227507 | 7.35445 | 42.7301 | 208712_at | chr11q13.2 | 279.6 |
CCND3 | ENSG00000112576 | ENST00000372991 | 43.8105 | 43.8105 | 1562028_at | chr6p21.1 | 228.4 |
DKK1 | ENSG00000107984 | ENST00000373970 | 0.765215 | 1.24334 | 204602_at | chr10q21.1 | 521.7 |
DKK1 | ENSG00000107984 | CUFF.403.1 | 0.478122 | 1.24334 | 204602_at | chr10q21.1 | 521.7 |
FGFR3 | ENSG00000068078 | ENST00000260795 | 25.4733 | 48.3278 | 204380_s_at | chr4p16.3 | 870.7 |
FGFR3 | ENSG00000068078 | CUFF.20476.3 | 12.4934 | 48.3278 | 204380_s_at | chr4p16.3 | 870.7 |
FGFR3 | ENSG00000068078 | CUFF.20476.2 | 10.3612 | 48.3278 | 204380_s_at | chr4p16.3 | 870.7 |
MAF | ENSG00000178573 | ENST00000393350 | 11.1179 | 23.4381 | 1566323_at | chr16q23.1 | 7.1 |
MAF | ENSG00000178573 | CUFF.7714.4 | 7.70292 | 23.4381 | 1566323_at | chr16q23.1 | 7.1 |
MAF | ENSG00000178573 | ENST00000326043 | 4.61729 | 23.4381 | 1566323_at | chr16q23.1 | 7.1 |
MAFB | ENSG00000204103 | ENST00000373313 | 0.713849 | 0.713849 | 218559_s_at | chr20q12 | 141.9 |
NFKB1 | ENSG00000109320 | CUFF.21095.8 | 7.80674 | 10.7257 | 209239_at | chr4q24 | 977.1 |
NFKB1 | ENSG00000109320 | CUFF.21095.12 | 2.919 | 10.7257 | 209239_at | chr4q24 | 977.1 |
WHSC1 | ENSG00000109685 | ENST00000508355 | 121.89 | 249.395 | 1557780_at | chr4p16.3 | 643.5 |
WHSC1 | ENSG00000109685 | CUFF.20684.17 | 68.9562 | 249.395 | 1557780_at | chr4p16.3 | 643.5 |
WHSC1 | ENSG00000109685 | ENST00000382891 | 58.5494 | 249.395 | 1557780_at | chr4p16.3 | 643.5 |