From: Genome sequence-based species delimitation with confidence intervals and improved distance functions
Correlations | Settings | |||||
---|---|---|---|---|---|---|
Dataset | Type | Estimate | Alignment tool or method | E-value filter | Algorithm | Formula |
DS1 | Kendall | -0.761 | BLAT | 10 | Coverage | d6, d8 |
-0.752 | BLAST+ (WL46) | 10 | Coverage | d6, d8 | ||
-0.677 | BLAST+ (WL46) | 10 | Coverage | d 4 | ||
Pearson | -0.956 | BLAT | 10 | Greedy | d 6 | |
-0.956 | BLAT | 10−2 | Trimming | d 6 | ||
-0.946 | BLAST+ (WL38) | 10 | Coverage | d 4 | ||
-0.935 | BLAST+ (WL46) | 10 | Coverage | d6, d8 | ||
DS2 | Kendall | -0.763 | BLAT | 10 | Coverage | d6, d8 |
Pearson | -0.954 | BLAT | 10 | Coverage | d6, d8 | |
DS3 | Kendall | -0.783 | BLAST+ (WL38) | any | Coverage | d6, d8 |
-0.717 | ANI | - | - | - | ||
Pearson | -0.980 | MUMmer (MR20) | - | Greedy | d0, d6 | |
-0.973 | ANI | - | - | - | ||
DS4 | Kendall | -0.737 | BLAT | 10, 10−2 | Coverage | d6, d8 |
-0.735 | BLAST+ (WL45) | any | Coverage | d6, d8 | ||
-0.693 | Tetra | - | - | - | ||
-0.598 | ANIb | - | - | - | ||
-0.594 | ANIm | - | - | - | ||
Pearson | -0.957 | BLAT | 10−2 | Greedy | d 6 | |
-0.904 | ANIm | - | - | - | ||
-0.703 | ANIb | - | - | - | ||
-0.693 | Tetra | - | - | - |