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Figure 8 | BMC Bioinformatics

Figure 8

From: Calculation of Tajima’s D and other neutrality test statistics from low depth next-generation sequencing data

Figure 8

Applications to real data. Genomic scans using a sliding window approach of 10 kb. The UCSC Tajima track was downloaded from the UCSC genome browser, and was shifted relatively to LCT gene on the hg19 human assembly. The vertical red line indicates window centers where the EB method (100 kb window) has a Tajima’s D below−1.8. Figure a) is using our EB method with varying window sizes. Figure b) is our EB method together with the genotype calling methods. We tried with varying p-value cutoffs for the genotype calling methods, and are using a window size of 100 kb.

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