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Table 6 Average coverage (in reads/junction) and probability score of junctions by canonical signal

From: PASTA: splice junction identification from RNA-Sequencing data

  

Canonical junctions

Non-canonical junctions

Run

Lane id

Junctions

Avg score

Avg Cov

Junctions

Avg score

Avg Cov

1

1

144869

0.783

11.85

199397

0.196

2.001

 

3

133780

0.787

10.428

164553

0.192

1.967

 

5

147430

0.777

12.493

246308

0.177

1.909

 

6

137620

0.756

10.955

236834

0.161

1.831

 

7

139533

0.756

12.907

242890

0.174

2.142

 

8

165421

0.753

15.589

345043

0.179

2.303

2

1

153599

0.871

18.534

213927

0.360

2.151

 

2

132287

0.888

8.983

100505

0.315

1.678

 

3

133965

0.884

9.781

123119

0.288

1.68

 

5

137729

0.89

10.242

111716

0.346

1.721

 

6

145698

0.882

12.946

164038

0.304

1.871

 

7

151673

0.869

16.193

227389

0.299

2.185

 

8

151274

0.864

16.272

235928

0.307

2.207

  1. Canonical Junctions indicates predicted junctions with a canonical splicing signal, while Non-canonical Junctions indicates predicted junctions without the canonical signal. Only junctions with a maximum coverage of 100 were considered.