Table 4 Categories of genotype permutations explored in VIPER.
From: VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
Category | Permutation |
|---|---|
1. | Copy (one-way) complete genotypes between individuals |
2. | Copy (one-way) some genotypes between individuals |
3. | Swap all genotypes from one into a different individual |
4. | Swap some genotypes from one into a different individual |
5. | Mix some random genotypes into individual |
6. | Regenotyped family with novel father |
7. | Regenotyped litter with novel father |
8. | Regenotyped full sire sib set with novel father |
9. | Regenotyped individual with novel father |
10. | Score sex linked marker as homozygous |
11. | Swap non sibling IDs between generations |
12. | Swap non sibling IDs in same generation |
13. | Swap sire sibling IDs in same generation |
14. | Swap siblings IDs |