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Figure 6 | BMC Bioinformatics

Figure 6

From: RuleBender: integrated modeling, simulation and visualization for rule-based intracellular biochemistry

Figure 6

The simulation results viewer. The upper left quadrant of the window contains a file explorer for easy retrieval of the exact version of a particular model associated with a specific set of results; the bottom left quadrant shows the list of species or observables. Charts in linear or log scale show the time series for concentrations of chemical species and observables. Any number of species and observables can be compared in the same chart. Furthermore, multiple simulation runs can be compared in order to analyze the effects of changing the model. The example in the snapshot compares the results of two simulations (points and lines) with three observables selected individually.

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