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Table 6 Analysis of the CIC-0 protein belonging to the Chloride Channel family

From: Ab initio detection of fuzzy amino acid tandem repeats in protein sequences

Protein

Tandem repeats found by

ID

Acc #

Length

PTRStalker

HHRep

TRUST

RADAR

CLC-0[CICH_TORMA]

P21564

805aa

[8-289]

[119-220]

[82-195]

[102-154]

   

[291-575]

[174-260]

[196-303]

[161-205]

      

[214-265]

   

[517-627]

[542-597]

[447-483]

[329-353]

   

[628-800]

[718-770]

[484-527]

[386-407]

     

[528-564]

 
  1. For each algorithm that returned at least a result we report the fuzzy repeated subsequences detected by giving its start and its end position. Note that XSTREAM, T-REKS, and HHrepID are not listed here because they could not find any repetitive structure.
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BMC Bioinformatics

ISSN: 1471-2105

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