Event type | Corpora | Core arguments | Optional arguments |
---|---|---|---|
Gene expression | GE, ID | Theme(Protein, Regulon/OperonID) | |
Transcription | GE, ID | Theme(Protein, Regulon/OperonID) | |
Protein catabolism | GE, ID | Theme(Protein) | |
Phosphorylation* | GE, EPI, ID | Theme(Protein) | Site(Entity) |
Localization | GE, ID, BB | ThemeGE, ID(Protein, Core entityID), BacteriumBB(Bacterium), LocalizationBB(Host, HostPart, Geographical, Environmental, Food, Medical, Soil, Water) | AtLocGE, ID(Entity), ToLocGE, ID(Entity) |
Binding | GE, ID | Theme(Protein, Core entityID)+ | Site(Entity)+ |
Regulation | GE, ID | Theme(Protein, Core entityID, Event), Cause(Core entityID, Event) | Site(Entity), CSite(Entity) |
Positive regulation | GE, ID | Theme(Protein, Core entityID, Event), Cause(Protein, Core entityID, Event) | Site(Entity), CSite(Entity) |
Negative regulation | GE, ID | Theme(Protein, Core entityID, Event), Cause(Core entityID, Event) | Site(Entity), CSite(Entity) |
Process | ID | Participant(Core entity) | |
Hydroxylation* | EPI | Theme(Protein) | Site(Entity) |
Ubiquitination* | EPI | Theme(Protein) | Site(Entity) |
DNA methylation* | EPI | Theme(Protein) | Site(Entity) |
Glycosylation* | EPI | Theme(Protein) | Site(Entity) |
Acetylation* | EPI | Theme(Protein) | Site(Entity) |
Methylation* | EPI | Theme(Protein) | Site(Entity) |
Catalysis | EPI | Theme(Event), Cause(Protein) | |
PartOf | BB | HostPart(HostPart), Host(Host) | |
RegulonDependence | BI | Regulon(Regulon), Target(GeneEntity, ProteinEntity) | |
BindTo | BI | Agent(ProteinEntity), Target(Site, Promoter, Gene, GeneComplex) | |
TranscriptionFrom | BI | Transcription(Transcription, Expression), Site(Site, Promoter) | |
RegulonMember | BI | Regulon(Regulon), Member(GeneEntity, ProteinEntity) | |
SiteOf | BI | Site(Site), Entity(Site, Promoter, GeneEntity) | |
TranscriptionBy | BI | Transcription(Transcription), Agent(ProteinEntity) | |
PromoterOf | BI | Promoter(Promoter), Gene(GeneEntity, ProteinEntity) | |
PromoterDependence | BI | Promoter(Promoter), Protein(GeneEntity, ProteinEntity) | |
ActionTarget | BI | Action(Action, Expression, Transcription), Target(Any type) | |
Interaction | BI | Agent(GeneEntity, ProteinEntity), Target(GeneEntity, ProteinEntity) | |
Coref | CO | Anaphora(Exp), Antecedent(Exp), Reference(Protein)+ | |
Protein-Component | REL | Arg1(Protein), Arg2(Entity) | |
Subunit-Complex | REL | Arg1(Protein), Arg2(Entity) | |
Renaming | REN | Former(Gene), New(Gene) |