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Table 5 List of relations in the Gene Interaction corpus.

From: BioNLP Shared Task - The Bacteria Track

Name

Example

ActionTarget

expression of yvyD

Interaction

ComK negatively regulates degR expression

RegulonDependence

sigmaB regulon

RegulonMember

yvyD is member of sigmaB regulon

BindTo

GerE adheres to the promoter

SiteOf

-35 sequence of the promoter

PromoterOf

the araE promoter

PromoterDependence

GerE-controlled promoter

TranscriptionFrom

transcription from the upstream site

TranscriptionBy

transcription of cotD by sigmaK RNA polymerase