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Table 1 EPI event types and their arguments

From: Overview of the ID, EPI and REL tasks of BioNLP Shared Task 2011

Type

Core arguments

Additional arguments

HYDROXYLATION

Theme(PROTEIN)

Site(ENTITY)

DEHYDROXYLATION

Theme(PROTEIN)

Site(ENTITY)

PHOSPHORYLATION

Theme(PROTEIN)

Site(ENTITY)

DEPHOSPHORYLATION

Theme(PROTEIN)

Site(ENTITY)

UBIQUITINATION

Theme(PROTEIN)

Site(ENTITY)

DEUBIQUITINATION

Theme(PROTEIN)

Site(ENTITY)

DNA METHYLATION

Theme(PROTEIN)

Site(ENTITY)

DNA DEMETHYLATION

Theme(PROTEIN)

Site(ENTITY)

GLYCOSYLATION

Theme(PROTEIN)

Site(ENTITY), Sidechain(ENTITY)

DEGLYCOSYLATION

Theme(PROTEIN)

Site(ENTITY), Sidechain(ENTITY)

ACETYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

DEACETYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

METHYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

DEMETHYLATION

Theme(PROTEIN)

Site(ENTITY), Contextgene(PROTEIN)

CATALYSIS

Theme(Event), Cause(PROTEIN)

 
  1. The type of entity allowed as argument is specified in parenthesis.