The Genia Event and Protein Coreference tasks of the BioNLP Shared Task 2011

BMC Bioinformatics

Table 5 System profiles

Team		NLP		GE. task		CO. task
Team	Lexical Proc.	Syntactic Proc.	Trig.	Arg.	group	Mark.	Coref.
FAUST	SnowBall, CNLP	McCCJ+SD	Stacking (UMASS + Stanford)				-
UMASS	SnowBall, CNLP	McCCJ+SD	Joint infer., Dual Decomposition				-
UTurku	Porter	McCCJ+SD	SVM	SVM	SVM	SVM	SVM
MSR-NLP	Porter	McCCJ+SD, Enju	SVM	MaxEnt	rules		-
ConcordU	-	McCCJ+SD	dic	rules	rules	rules	rules
UWMadison	Morpha, Porter	McCCJ+SD	Joint infer., SEARN				-
Stanford	Morpha, CNLP	McCCJ+SD	MaxEnt	MSTParser			-
BMI@ASU	Porter, WordNet	Stanford+SD	SVM	SVM	UTurku		-
CCP-BTMG	Porter, WordNet	Stanford+SD	Subgraph Isomorphism				-
TM-SCS	Stanford	Stanford	dic	rules	rules		-
XABioNLP	KAF	-		rules			-
HCMUS	OpenNLP	-	dic, rules	rules			-
UUtah	GTag	Enju		-		SVM	Reconcile
UZurich	LingPipe	Pro3Gres		-		rules	rules
USzeged	CTag, Morpha	McCCJ		-		rules	SVM
UCD	GTag, LingPipe	-		-		rules	SVM

Proc.=Processing, Trig.=Trigger detection, Arg.=Argument linking, group=Argument grouping, Mark.=Markable detection, Coref.=Coreference linking, SnowBall=SnowBall Stemmer, CNLP=Stanford CoreNLP (tokenization), CTag=CNC Tagger, GTag=Genia Tagger, KAF=Kyoto Annotation Format McCCJ=McClosky-Charniak-Johnson Parser, Stanford=Stanford Parser, SD=Stanford Dependency Conversion.

ISSN: 1471-2105