From: Efficient error correction for next-generation sequencing of viral amplicons
 | ET | KEC | SHORAH_all | SHORAH_1% | ||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 | MT | FS | RMSE | HD | MT | FS | RMSE | HD | MT | FS | RMSE | HD | MT | FS | RMSE | HD |
S1 | 0 | 0 | 0.00 | 0.00 | 0 | 2 | 1.64 | 2.50 | 0 | 351 | 29.02 | 4.83 | 0 | 3 | 19.19 | 2.00 |
S2 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 269 | 30.12 | 4.44 | 0 | 3 | 21.70 | 1.00 |
S3 | 0 | 1 | 1.04 | 1.00 | 0 | 0 | 0.00 | 0.00 | 0 | 292 | 23.44 | 5.31 | 0 | 2 | 14.94 | 1.00 |
S4 | 0 | 1 | 0.96 | 2.00 | 0 | 0 | 0.00 | 0.00 | 0 | 271 | 44.68 | 5.37 | 0 | 1 | 37.87 | 1.00 |
S5 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 319 | 9.63 | 4.47 | 0 | 0 | 0.00 | 0.00 |
S6 | 0 | 1 | 0.70 | 2.00 | 0 | 0 | 0.00 | 0.00 | 0 | 194 | 18.70 | 3.90 | 0 | 3 | 12.03 | 1.00 |
S7 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 496 | 21.52 | 6.70 | 0 | 4 | 9.13 | 8.50 |
S8 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 262 | 14.37 | 4.58 | 0 | 1 | 3.16 | 1.00 |
S9 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 183 | 6.23 | 6.97 | 0 | 0 | 0.00 | 0.00 |
S10 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 288 | 7.77 | 5.11 | 0 | 0 | 0.00 | 0.00 |
S11 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 717 | 24.71 | 5.03 | 0 | 3 | 9.41 | 1.00 |
S12 | 0 | 1 | 0.65 | 2.00 | 0 | 0 | 0.00 | 0.00 | 0 | 611 | 25.94 | 5.52 | 0 | 4 | 10.61 | 1.50 |
S13 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 156 | 5.53 | 4.93 | 0 | 0 | 0.00 | 0.00 |
S14 | 0 | 0 | 0.00 | 0.00 | 0 | 0 | 0.00 | 0.00 | 0 | 161 | 6.83 | 6.60 | 0 | 0 | 0.00 | 0.00 |
Mean | 0.00 | 0.29 | 0.24 | 0.50 | 0.00 | 0.14 | 0.12 | 0.18 | 0.00 | 326.43 | 19.18 | 5.27 | 0.00 | 1.71 | 9.86 | 1.29 |
M1 | 0 | 0 | 1.26 | 0.00 | 0 | 0 | 0.78 | 0.00 | 0 | 320 | 1.23 | 4.51 | 0 | 0 | 0.76 | 0.00 |
M2 | 0 | 0 | 1.50 | 0.00 | 0 | 0 | 1.95 | 0.00 | 0 | 738 | 3.70 | 4.44 | 0 | 2 | 3.47 | 1.00 |
M3 | 0 | 0 | 2.87 | 0.00 | 0 | 0 | 4.22 | 0.00 | 0 | 638 | 3.65 | 4.25 | 0 | 1 | 4.42 | 1.00 |
M4 | 0 | 0 | 2.12 | 0.00 | 0 | 0 | 3.09 | 0.00 | 0 | 577 | 2.88 | 5.20 | 0 | 1 | 3.08 | 1.00 |
M5 | 0 | 0 | 0.29 | 0.00 | 7 | 0 | 7.00 | 0.00 | 0 | 214 | 0.91 | 7.37 | 7 | 0 | 7.00 | 0.00 |
M6 | 0 | 0 | 2.45 | 0.00 | 0 | 0 | 1.81 | 0.00 | 0 | 394 | 3.25 | 4.50 | 0 | 0 | 2.57 | 0.00 |
M7 | 0 | 0 | 1.04 | 0.00 | 0 | 0 | 2.42 | 0.00 | 0 | 499 | 2.04 | 5.00 | 0 | 0 | 2.95 | 0.00 |
M8 | 0 | 0 | 0.40 | 0.00 | 0 | 0 | 2.25 | 0.00 | 0 | 336 | 3.30 | 5.48 | 0 | 1 | 3.22 | 1.00 |
M9 | 0 | 0 | 2.40 | 0.00 | 0 | 0 | 1.53 | 0.00 | 0 | 643 | 6.56 | 4.49 | 1 | 4 | 4.02 | 1.00 |
M10 | 0 | 0 | 3.70 | 0.00 | 0 | 0 | 4.16 | 0.00 | 1 | 637 | 6.13 | 5.30 | 1 | 2 | 5.73 | 1.50 |
Meann | 0.00 | 0.00 | 1.80 | 0.00 | 0.70 | 0.00 | 2.92 | 0.00 | 0.10 | 499.60 | 3.37 | 5.05 | 0.90 | 1.10 | 3.72 | 0.65 |