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Table 6 Annotation results of 5 proteins in yeast GFP Fusion Localization database by the ensemble classifier and 4 basic classifiers.

From: Predicting multiplex subcellular localization of proteins using protein-protein interaction network: a comparative study

Protein

Annotation

Majority

χ2 score

GMC

FunFlow

Ensemble

YAL029C

cell periphery;bud neck; cytoplasm;bud

bud neck; cytoplasm;nucleus

cell periphery;

bud neck;bud

nucleus

cytoplasm

bud neck;cytoplasm; nucleus;bud

YBR130C

cell periphery;

cytoplasm;bud

cell periphery; cytoplasm;nucleus

cell periphery;

bud neck;bud

 

cytoplasm

cell periphery; cytoplasm;bud

YBR260C

bud neck; cytoplasm;bud

bud neck;

cytoplasm

mitochondrion;

bud neck;nucleus

cytoplasm

 

bud neck;

cytoplasm

YDR181C

cytoplasm;

nucleus

cytoplasm;

nucleus

mitochondrion;

nucleolus;nucleus

cytoplasm;nucleus

nucleus

cytoplasm;

nucleus

YNL298W

cell periphery;

cytoplasm;bud

cell periphery;

cytoplasm;nucleus

cell periphery; bud neck;cytoplasm

cytoplasm

 

cell periphery;

cytoplasm

  1. Our method can predict all the labels for the proteins, while other approaches can only recover part of the labels.