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Table 4 Comparison of the four programs on PYP-like family in Profilin-like folds.

From: Computing the protein binding sites

 

BsFinder

SiteEngine

SuMo

pdbFun

 

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

1D7E

4845/834

17/58

5017/698

14/48

2582/173

7/13

223/33

15/3

1F9I

5771/1068

18/64

5680/740

13/44

3405/224

7/14

203/13

7/1

1KOU

5352/1297

24/59

4521/896

20/41

2421/264

11/13

916/80

9/4

1NWZ

5027/1279

25/63

5497/914

17/45

2096/243

12/13

206/23

12/2

2PHY

5451/1189

21/57

4014/821

20/39

3178/285

9/14

208/15

8/1

  1. †The first number is the number of output sites reported by the program, the second number is the number of confirmed sites reported by the program;
  2. ‡The first number is the precision value (%) for the program, the second number is the recall value (%) for the program;