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Table 3 Comparison of the four programs on G proteins family in P-loop folds.

From: Computing the protein binding sites

 

BsFinder

SiteEngine

SuMo

pdbFun

 

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

number†

ratio(%)‡

1A2B

7601/3647

48/95

6579/1717

26/40

6375/1209

19/29

1787/381

21/9

1CXZ

7832/3602

46/93

7425/1480

20/35

8388/1433

18/34

2696/403

15/10

1DPF

7537/3241

43/92

5975/1343

23/34

4702/1029

22/26

1993/365

18/10

1FTN

7435/3121

42/91

7147/1471

21/35

8599/1328

16/31

2232/414

19/11

1S1C

7995/3827

47/99

7460/1382

19/36

6037/1299

22/34

1898/532

28/14

  1. †The first number is the number of output sites reported by the program, the second number is the number of confirmed sites reported by the program;
  2. ‡The first number is the precision value (%) for the program, the second number is the recall value (%) for the program;
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BMC Bioinformatics

ISSN: 1471-2105

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