Table 5 Statistical significance of functional modules predicted by various methods
Algorithms | No. of Modules size>=3 | No. of Significant Modules | Average Size | Maximum | f-measure of BP | -log(p-value) | Parameters |
|---|---|---|---|---|---|---|---|
MCODE | 59 | 54 | 83.8 | 549 | 0.296 | 10.87 | fluff = 0.1; VWP = 0.2 |
CFinder | 245 | 157 | 10.2 | 1409 | 0.246 | 4.49 | K = 3 |
DPClus | 217 | 187 | 5.23 | 25 | 0.335 | 6.78 | Density = 0.7;CPin=0.5 |
COACH | 746 | 608 | 8.54 | 44 | 0.272 | 6.96 | Null |
GSM-CA | 187 | 168 | 7.37 | 79 | 0.362 | 8.6 | CN in =0.5 |
GSM-FC | 113 | 106 | 9.65 | 118 | 0.359 | 10.46 | Null |