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Table 2 Summary of results

From: Comparative evaluation of set-level techniques in predictive classification of gene expression samples

Factor

Alternatives

 

Better

Worse

1. Gene sets

Genuine

Random

2. Ranking algo

Global

SAM-GS, GSEA

3. Sets forming features

high ranking, 1:10 (best ten sets)

low ranking, 1 (best set)

4. Aggregation*

SetSig, SVD

AVG

  1. See Section Main Results for details on how the conclusions were determined.
  2. *Difference not significant if Factor 3 is 1:10.