gene selection method | no. significant wins | network based |
---|
PAM | 4 | No |
sigGenNB | 3 | No |
sigGenSVM | 2 | No |
SCAD | 6 | No |
HHSVM
|
9
| No |
RFE | 1 | No |
RRFE | 6 | Yes |
graphK | 2 | Yes |
graphkKp | 1 | Yes |
networkSVM | 1 | Yes |
PAC | 0 | Yes |
aveExpPath
|
9
| Yes |
HubClassify | 6 | Yes |
pathBoost | 4 | Yes |
network based (average)
|
3.625
| Â |
classical (average)
|
4.17
| Â |
- PAM (prediction analysis of microarray data), sigGenNB (SAM + Naïve Bayes), sigGenSVM (SAM + SVM),SCAD-SVM, HHSVM (Huberized Hinge loss SVM), RFE (Recursive Feature Elimination), RRFE (Reweighted Recursive Feature Elimination), graphK (graph diffusion kernels for SVMs), graphKp (p-step random walk graph kernel for SVMs), networkSVM (Network-based SVM), PAC (Pathway Activity Classification), aveExpPath (average pathway expression), HubClassify (classification by significant hub genes), pathBoost.