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Table 1 Comparison of normalization factor estimators on yeast strain SEG1 through the MACS algorithm

From: Normalization of ChIP-seq data with control

 

r ̂

Π ̂ 0

#peaks byp-value

#peaks by FDR

NCIS

1.265

0.763

1844

1322

CCAT

1.173

0.707

1943

1723

SPP

1.370

0.826

1736

688

CisGenome

1.553

0.937

1547

4

PeakSeq

1.674

1.009

1431

1

MACS

1.658

1

1449

1

  1. The fourth column contains the numbers of detected peaks with p-value ≤ 1 e-5. The fifth column contains the numbers of detected peaks at FDR level 0.05.
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