Feature | miROrtho[4] | miRNA-miner[21] | microHAR-VESTER[20] | miRanalyzer[18] | miRExpress[17] | miRDeep-P[9] | miRDeep2[22] | UEA sRNA toolkit[19] | miREvo |
---|---|---|---|---|---|---|---|---|---|
Next-generation sequencing technology support | × | × | × | √ | √ | √ | √ | √ | √ |
Expression profiling | × | × | × | √ | √ | × | √ | √ | √ |
comparison of orthologous gene expression | × | × | × | × | × | × | × | × | √ |
Novel miRNA Prediction for plant/animal | Animal | Animal | × | Both | × | Plant | Animal | Both | Both |
Stem-loop structure viewing | √ | √ | √ | √ | √ | √ | √ | √ | √ |
Homology searching in plant/animal kingdom | Animal | Animal | Plant | × | × | × | × | × | Both |
evolutionary distance calculating | × | × | × | × | × | × | × | × | √ |
Multiple miRNAs queries support | × | × | 5 sequences max | × | × | × | × | √ | √ |
Standalone/Web-service | Web | Web | Web | Both | Standalone | Standalone | Standalone | Both | Standalone |
GUI/CLI | GUI | GUI | GUI | Both | CLI | CLI | CLI | GUI | Both |