| GSEA | GSA | PADOG |
---|
p geometric mean | 0.2846 | 0.1387 |
0.0485
|
p median | 0.2468 | 0.142 |
0.091
|
% p<0.05 | 0 | 16.7 |
33.3
|
% q<0.05 | 0 | 0 |
4.2
|
rank mean | 41.42 | 26.97 |
18.95
|
rank med | 38.43 | 16.7 |
13.05
|
Wilcoxon p | 0.9956 | reference |
0.0006
|
LME p | 0.9962 | reference |
0.0023
|
LME coefficient | 14.45 | reference |
-8.02
|
- The table shows statistics computed from nominal and adjusted p-values, and ranks of the 24 target pathways only, including geometric mean, median and percentages of pathways significant at 0.05 level based on nominal and adjusted p-values (q-values). The results of comparing the ranks of each method against GSA method (chosen as reference), using a paired Wilcoxon test and a linear mixed-effects model, are included. The best value for each criterion is shown in bold.