Table 4 Results for the simulation study for the case of having polymorphic CNVs
From: Bayesian model to detect phenotype-specific genes for copy number data
Bayesian Shared Model | |||||||
|---|---|---|---|---|---|---|---|
Multinomial | Posterior | Normal | Posterior | ||||
# SNPs | χ 2 | K-W | regression | Distribution | Approximation | Probability | |
moderate risk scenario (OR=2.0) | |||||||
TPR | 2000 | 48.50 | 0 | 52.25 | 75.25 | 74.25 | 75.50 |
TNR | 2000 | 100.00 | 100 | 100.00 | 100.00 | 100.00 | 100.00 |
TPR | 500 | 46.25 | 0 | 42.50 | 64.50 | 64.75 | 64.25 |
TNR | 500 | 100.00 | 100 | 100.00 | 100.00 | 100.00 | 100.00 |
moderate risk scenario (OR=1.5) | |||||||
TPR | 2000 | 30.25 | 0 | 35.45 | 58.50 | 58.50 | 57.75 |
TNR | 2000 | 100.00 | 100 | 100.00 | 99.98 | 99.99 | 99.97 |
TPR | 500 | 20.50 | 0 | 23.25 | 44.25 | 44.25 | 44.50 |
TNR | 500 | 99.99 | 100 | 99.99 | 99.96 | 99.96 | 99.94 |
low risk scenario (OR=1.2) | |||||||
TPR | 2000 | 0.70 | 0 | 0.70 | 20.25 | 20.25 | 20.75 |
TNR | 2000 | 99.98 | 100 | 99.99 | 99.97 | 99.99 | 99.98 |
TPR | 500 | 0.50 | 0 | 0.50 | 16.25 | 16.25 | 15.75 |
TNR | 500 | 99.99 | 100 | 99.99 | 99.99 | 99.99 | 99.98 |