Execution time |
---|
Mafft | 27 s |
Muscle | 34 s |
Muscle-i | 157 s |
ProGraphMSA noCS | 191 s |
Mafft-i | 410 s |
ClustalW | 435 s |
POA | 448 s |
ProGraphMSA CS | 2351 s |
Prank | 12965 s |
- Average execution times of the tested MSA tools estimated on the BAliBASE 3.0 benchmark. With a small number of sequences, as in this case, ProGraphMSA spends most of its execution time in the generation of context-specific profiles. With an increasing number of taxa we expect distance and tree estimation to consume an increasing share due to its quadratic time complexity.